 Sharon Temple Sessions |  1986 Whites Off Earth Now!! SR |  1988 The Trinity Session SR |  1990 The Caution Horses SR |
 1992 Black Eyed Man SR |  1993 Pale Sun, Crescent Moon SR |  1995 200 More Miles: Live Performances 1985–1994 SR |  1996 Lay It Down SR |
 1996 Studio: Selected Studio Recordings 1986–1995 R |  1998 Miles From Our Home SR |  1999 Rarities, B-Sides and Slow, Sad Waltzes SR |  2000 Waltz Across America R |
 2001 Open SR |  2001 Best of Cowboy Junkies SR |  2002 Open Road R |  2002 The Radio One Sessions |
 2003 Platinum & Gold Collection SR |  2003 In the Time Before Llamas |  2004 Best: Sweet Jane |  2004 One Soul Now SR |
 2005 Early 21st Century Blues SR |  2006 Long Journey Home R |  2007 Trinity Revisited R |  2007 At the End of Paths Taken SR |
 2007 Cookie Crumbs, Volume 1: The Path Taken Tour (Spring/Summer 2007) |  2008 Neath Your Covers, Part 2 |  2008 Cookie Crumbs, Volume 2: Blowin’ and Driftin’ (Ontario March 2003) |  2008 Cookie Crumbs, Volume 3: Waltz Across America Tour (October 2000) |
 2009 Acoustic Junk |  2009 Cookie Crumbs, Volume 4: In the Time Before Tapers |  2010 The Nomad Series, Volume 1: Renmin Park |  2010 The Nomad Series, Volume 2: Demons |
 2011 The Nomad Series, Volume 3: Sing in My Meadow |  2012 The Nomad Series, Volume 4: The Wilderness |  2012 The Nomad Series Box Set |  2014 Live at the Belly Up |
 2015 Notes Falling Slow SR |  2018 All That Reckoning SR | | |